Geomfinder 2.0
Submit a Job
Cases of use
Screencast (Help)
Pair of proteins to compare.
Protein A code*
or upload pdb file A
(Download sample PDB file A)
Protein B code*
or upload pdb file B
(Download sample PDB file B)
*Four characters code (Example:
1m9o
). It will be downloaded from
https://www.rcsb.org/
List of pairs of proteins to compare (
Max 10 lines
).
Upload a text file containing list of pairs of proteins. Example:
1tf6:*-1exp:A
(all chains in 1tf6 against chain A in 1exp)
1tf6:A,B,D-1exp:A
(chains A,B,D in 1tf6 against chain A in 1exp)
HOM1:A-1exp:A
(chain A in HOM1 against chain A in 1exp)
HOM2:A-1aay:A
(chain A in HOM2 against chain A in 1aay)
...
Download text file:
[Sample basic]
[Sample selecting the chains]
[Sample with models by homology]
Structures will be downloaded from
https://www.rcsb.org/
Homology modeled structures must be uploaded in the next page (lines starting with HOM).
School of Bioinformatics Engineering
| Department of Bioinformatics |
Universidad de Talca
| Talca, Chile